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User guide 2023 05 30T231030 102

ImageJ User Guide IJ m ImageJ User Guide IJ m Tiago Ferreira ? Wayne Rasband December Foreword The ImageJ User Guide provides a detailed overview of ImageJ and inherently Fiji the standard in scienti ?c image analysis It was thought as a comprehensive fully-searchable self-contained annotatable manual see Conventions Used in this Guide A HTML version is also available as well as printer-friendly booklets see Guide Formats Its latest version can always be obtained from http imagej nih gov ij docs guide The source ?les are available through a Git version control repository at http ?ji sc guide git Given ImageJ ? s heavy development this guide will always remain incomplete All ImageJ users and developers are encouraged to contribute to the ImageJ documentation resources see Getting Involved Contents Release Notes for ImageJ m vii Noteworthy viii Macro Listings ix Guide Conventions x I Getting Started What is ImageJ Installing and Maintaining ImageJ ImageJ Distributions Software Packages Built on Top of ImageJ ImageJ Getting Help Help on Image Analysis Help on ImageJ II Working with ImageJ Using Keyboard Shortcuts Finding Commands Undo and Redo Image Types and Formats Stacks Virtual Stacks and Hyperstacks Color Images Selections Settings and Preferences III Extending ImageJ Macros Scripts Plugins Scripting in Other Languages Running ImageJ From the Command Line ii ImageJ Interoperability IV ImageJ User Interface Tools Area Selection Tools Line Selection Tools Arrow Tool Angle Tool Point Tool Multi-point Tool Wand Tool Text Tool Magnifying Glass Scrolling Tool Color Picker Toolset Switcher Macro Tools Contextual Menu Results Table ImageJ Editor Log Window V Menu Commands File New Open Open Next O Open Samples Open Recent Import Close w Close All Save s Save As Revert r Page Setup Print p Quit Edit Undo z Cut x Copy c Copy to System Paste v iii Paste Control Clear Clear Outside Fill f Draw d Invert I Selection Options Image Type Adjust Show Info i Properties P Color Stacks Hyperstacks Crop X Duplicate D Rename Scale E Transform Zoom Overlay Lookup Tables Process Smooth S Sharpen Find Edges Find Maxima Enhance Contrast Noise Shadows Binary Math FFT Filters Batch Image Calculator Subtract Background Repeat Command R Analyze Measure m Analyze Particles Summarize Distribution Label Clear Results Set Measurements Set Scale iv Calibrate Histogram h Plot Pro ?le k Surface Plot Gels Tools Plugins Macros Shortcuts Utilities New Compile and Run Window Show All Put Behind tab Cascade Tile Help ImageJ Website ImageJ News Documentation Installation Mailing List Dev Resources Plugins Macros Macro Functions Update ImageJ Refresh Menus About Plugins About ImageJ VI Keyboard Shortcuts Key Modi ?ers Alt Key Modi ?cations Shift Key Modi ?cations Ctrl Key or Cmd Modi ?cations Space Bar Arrow Keys Tools Shortcuts Credits ImageJ Related Publications List of Abbreviations and Acronyms v Index Colophon vi Summarized Release Notes for ImageJ m Undoable Edit Undo z ImageJ can now open ZIP- compressed TIFFs New macro functions drawString text x y background IJ pad Overlay set Position roiManager select indexes Stack getFrameInterval